Sending Data from ELITE to CAVATICA using FTP links | Scribe

    Sending Data from ELITE to CAVATICA using FTP links

    • Nicholas Lee |
    • 15 steps |
    • 2 minutes

    Getting FTP links from the ELITE portal

    1

    Go to "Files" on the ELITE portal

    2

    Use the filters to get the your desired data

    3

    (Optional) Show the "Data File Key" column

    (Optional) Show the "Data File Key" column
    4

    Export the table of files

    Export the table of files
    5

    Open the downloaded CSV in excel or editor of choice.

    6

    Copy cells / text with links to add to Cavatica.

    Add Files to Cavatica Project

    7

    Navigate to your Cavatica project Home page for Cavatica: <https://cavatica.sbgenomics.com/>

    8

    Navigate to the "Files" tab

    9

    Click "Add files" on the right hand side

    10

    Click "FTP / HTTP" to add the files from Synapse

    11

    Paste the FTP links into this text box

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    Tip! Multiple links need to be separated by a new line. If uploading from a file, make sure only the links are in the file. The downloaded table from the ELITE portal contains extra columns. Delete those and the header before uploading the CSV.

    12

    Preview

    13

    Click "Auto-rename"

    14

    Click "Import"

    15

    That's it! The files will begin to appear in your Cavatica project. Refresh the page if you do not see the files appear automatically.