User Guide #5.1: Send Files to CAVATICA using FTP links | Scribe

    User Guide #5.1: Send Files to CAVATICA using FTP links

    • Milan Vu |
    • 15 steps |
    • 2 minutes

    Getting FTP links from the ELITE portal

    1
    Go to "Files" on the ELITE portal
    2
    Use the filters to get the your desired data
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    (Optional) Show the "Data File Key" column
    (Optional) Show the "Data File Key" column
    4
    Export the table of files
    Export the table of files
    5
    Open the downloaded CSV in excel or editor of choice.
    6
    Copy cells / text with links to add to Cavatica.

    Add Files to Cavatica Project

    7
    Navigate to your Cavatica project Home page for Cavatica: <https://cavatica.sbgenomics.com/>
    8
    Navigate to the "Files" tab
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    Click "Add files" on the right hand side
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    Click "FTP / HTTP" to add the files from Synapse
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    Paste the FTP links into this text box
    information ordinal icon
    Tip! Multiple links need to be separated by a new line. If uploading from a file, make sure only the links are in the file. The downloaded table from the ELITE portal contains extra columns. Delete those and the header before uploading the CSV.
    12
    Preview
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    Click "Auto-rename"
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    Click "Import"
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    That's it! The files will begin to appear in your Cavatica project. Refresh the page if you do not see the files appear automatically.